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#include <avr/boot.h>
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#include <avr/io.h>
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#include <avr/interrupt.h>
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#include <util/delay.h>
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#include "timer0.h"
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#include "timer2.h"
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#include "uart0.h"
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#include "output.h"
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#include "attitude.h"
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#include "commands.h"
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#include "flight.h"
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#include "rc.h"
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#include "analog.h"
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#include "configuration.h"
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#include "controlMixer.h"
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#include "eeprom.h"
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#include "printf_P.h"
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int16_t main(void) {
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  uint16_t timer;
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  static uint8_t profileTimer;
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  // disable interrupts global
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  cli();
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  // analyze hardware environment
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  setCPUType();
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  setBoardRelease();
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  // disable watchdog
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  MCUSR &= ~(1 << WDRF);
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  WDTCSR |= (1 << WDCE) | (1 << WDE);
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  WDTCSR = 0;
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// This is strange: It should NOT be necessarty to do. But the call of the same,
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// in channelMap_readOrDefault (if eeprom read fails) just sets all to 0,0,0,....
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// channelMap_default();
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  // initalize modules
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  output_init();
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  timer0_init();
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  timer2_init();
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  usart0_init();
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  //if (CPUType == ATMEGA644P);// usart1_Init();
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  RC_Init();
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  analog_init();
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  // Parameter Set handling
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  IMUConfig_readOrDefault();
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  channelMap_readOrDefault();
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  rcTrim_readOrDefault();
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  paramSet_readOrDefault();
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  // enable interrupts global
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  sei();
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  controlMixer_setNeutral();
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  // Cal. attitude sensors and reset integrals.
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  attitude_setNeutral();
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  // Init flight parameters
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  // flight_setNeutral();
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  // This is not a busy-wait operation and should be OK.
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  beep(2000);
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  while (1) {
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    if (runFlightControl) { // control interval
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      runFlightControl = 0; // reset Flag, is enabled every 2 ms by ISR of timer0
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      if (!analogDataReady) {
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        // Analog data should have been ready but is not!!
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        debugOut.digital[0] |= DEBUG_MAINLOOP_TIMER;
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      } else {
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        debugOut.digital[0] &= ~DEBUG_MAINLOOP_TIMER;
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          }
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        // This is probably the correct order:
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        // The attitude computation should not depend on anything from control (except maybe the estimation of control activity level)
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        // The control may depend on attitude - for example, attitude control uses pitch and roll angles, compass control uses yaw angle etc.
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        // Flight control uses results from both.
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#ifdef DO_PROFILE
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      startProfileTimer(ATTITUDE);
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#endif
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      calculateFlightAttitude();
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#ifdef DO_PROFILE
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      stopProfileTimer(ATTITUDE);
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#endif
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#ifdef DO_PROFILE
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      startProfileTimer(CONTROLMIXER);
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#endif
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      controlMixer_periodicTask();
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#ifdef DO_PROFILE
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      stopProfileTimer(CONTROLMIXER);
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#endif
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#ifdef DO_PROFILE
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      startProfileTimer(COMMANDS);
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#endif
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      commands_handleCommands();
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#ifdef DO_PROFILE
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      stopProfileTimer(COMMANDS);
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#endif
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#ifdef DO_PROFILE
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      startProfileTimer(FLIGHT);
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#endif
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      flight_control();
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#ifdef DO_PROFILE
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      stopProfileTimer(FLIGHT);
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#endif
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        // Allow Serial Data Transmit if motors must not updated or motors are not running
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        if (!runFlightControl || !isFlying) {
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          usart0_transmitTxData();
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        }
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        usart0_processRxData();
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        static uint8_t aboveWarningLimitVoltageSeen = 0;
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        if (checkDelay(timer)) {
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          if (UBat >= staticParams.batteryWarningVoltage) {
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            aboveWarningLimitVoltageSeen = 1;
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          } else { // If we are above USB voltage, or if we have once been above warning voltage
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            if (aboveWarningLimitVoltageSeen || UBat > UBAT_AT_5V) {
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              beepBatteryAlarm();
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            }
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          }
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          calculateFeaturedServoValues();
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          timer = setDelay(20); // every 20 ms
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        }
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        output_update();
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        if (runFlightControl) { // Time for the next iteration was up before the current finished. Signal error.
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          debugOut.digital[1] |= DEBUG_MAINLOOP_TIMER;
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        } else {
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          debugOut.digital[1] &= ~DEBUG_MAINLOOP_TIMER;
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        }
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      }
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  }
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  return (1);
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}